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İlknur Karadeniz

Assistant Professor

 

Department of Computer Engineering
Işık University
Istanbul, Turkey

 

Office: Şile Campus / AMF 326-A

E-mail: ilknur dot karadeniz at isikun dot edu dot tr

Linking Entities through an Ontology using Word Embeddings and Syntactic Re-Ranking, İ. Karadeniz and A.Özgür,BMC Bioinformatics, 2019.

 

Literature Mining and Ontology based Analysis of Host-Brucella Gene–Gene Interaction Network, İ. Karadeniz, J.Hur, Y. He,A.Özgür,Frontiers in microbiology, 2015.

 

Detection and categorization of bacteria habitats using shallow linguistic analysis, İ. Karadeniz and A.Özgür, BMC Bioinformatics, 2015.

 

PHISTO: pathogen–host interaction search tool, S. Durmuş Tekir, T. Çakır, E. ARdıç, A.S. Sayılırbaş, G. Konuk, M. Konuk, H. Sarıyer, A. Uğurlu, İ. Karadeniz, A. Özgür, F.E. Sevilgen, K.Ö. Ülgen, Bioinformatics, 2013.

 

Bacteria biotope detection, ontology-based normalization, and relation extraction using syntactic rules, İ. Karadeniz and A.Özgür,Proceedings of the BioNLP Shared Task, 2013.

 

Generating java class skeleton using a natural language interface, E. Özcan, Ş.E. Şeker, and Z.İ. Karadeniz, Proceedings of the 1st international workshop on natural language understanding and cognitive science, 2004.